Recherche - ANR - Agence nationale de la recherche

Filtrer vos résultats

52 résultats
Page :
triés par
Image document

Closed and high quality bacterial genomes of the Oligo Mouse Microbiota community

 Quentin Lamy-Besnier , Romain Koszul , Laurent Debarbieux , Martial Marbouty
Microbiology Resource Announcements, 2021, 10 (17), pp.e01396-20. ⟨10.1128/MRA.01396-20⟩
Article dans une revue pasteur-03204821v1
Image document

Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.

 Maya Spichal , Alice Brion , Sébastien Herbert , Axel Cournac , Martial Marbouty , et al.
Journal of Cell Science, 2016, 129 (4), pp.681-92. ⟨10.1242/jcs.175745⟩
Article dans une revue pasteur-01419905v1
Image document

Beyond the bounds of evolution: Synthetic chromosomes… How and what for?

 Romain Koszul
Comptes Rendus Biologies, 2016, 339 (7-8), pp.324-8. ⟨10.1016/j.crvi.2016.05.007⟩
Article dans une revue pasteur-01419924v1
Image document

Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae

 Astrid Lancrey , Alexandra Joubert , Evelyne Duvernois-Berthet , Etienne Routhier , Saurabh Raj , et al.
Journal of Molecular Biology, 2022, ⟨10.1016/j.jmb.2022.167497⟩
Article dans une revue hal-03343705v2
Image document

3D organization of synthetic and scrambled chromosomes

 Guillaume Mercy , Julien Mozziconacci , Vittore F Scolari , Kun Yang , Guanghou Zhao , et al.
Science, 2017, 355 (6329), pp.eaaf4597. ⟨10.1126/science.aaf4597⟩
Article dans une revue pasteur-01523221v1
Image document

Computer vision for pattern detection in chromosome contact maps

 Cyril Matthey-Doret , Lyam Baudry , Axel Breuer , Rémi Montagne , Nadège Guiglielmoni , et al.
Nature Communications, 2020, 11 (1), pp.5795. ⟨10.1038/s41467-020-19562-7⟩
Article dans une revue pasteur-03263561v1
Image document

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

 Jean-François Flot , Boris Hespeels , Xiang Li , Benjamin Noel , Irina Arkhipova , et al.
Nature, 2013, 500 (7463), pp.453-457. ⟨10.1038/nature12326⟩
Article dans une revue hal-01282538v1
Image document

Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi‐C

 Héloise Muller , Vittore F Scolari , Nicolas Agier , Aurele Piazza , Agnès Thierry , et al.
Molecular Systems Biology, 2018, 14 (7), pp.e8293. ⟨10.15252/msb.20188293⟩
Article dans une revue hal-01890095v1
Image document

Generating High-Resolution Hi-C Contact Maps of Bacteria

 Agnès Thierry , Charlotte Cockram
Hi-C Data Analysis, 2301, Springer US, pp.183-195, 2021, Methods in Molecular Biology, 978-1-0716-1390-0. ⟨10.1007/978-1-0716-1390-0_9⟩
Chapitre d'ouvrage pasteur-03686079v1
Image document

Filling the gap: Micro-C accesses the nucleosomal fiber at 100-1000 bp resolution.

 Julien Mozziconacci , Romain Koszul
Genome Biology, 2015, 16 (1), pp.169. ⟨10.1186/s13059-015-0744-8⟩
Article dans une revue pasteur-01420328v1

Effect of nuclear architecture on the efficiency of double-strand break repair

 Neta Agmon , Batia Liefshitz , Christophe Zimmer , Emmanuelle Fabre , Martin Kupiec
Nature Cell Biology, 2013, 15 (6), pp.694-699. ⟨10.1038/ncb2745⟩
Article dans une revue pasteur-02446715v1
Image document

High-throughput identification of viral termini and packaging mechanisms in virome datasets using PhageTermVirome

 Julian R. Garneau , Véronique Legrand , Martial Marbouty , Maximilian O. Press , Dean R. Vik , et al.
Scientific Reports, 2021, 11 (1), pp.18319. ⟨10.1038/s41598-021-97867-3⟩
Article dans une revue pasteur-03369740v1

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins

 Virginia S. Lioy , Axel Cournac , Martial Marbouty , Stéphane Duigou , Julien Mozziconacci , et al.
Cell, 2018, 172 (4), pp.771--783.e18. ⟨10.1016/j.cell.2017.12.027⟩
Article dans une revue hal-02180787v1
Image document

MatP local enrichment delays segregation independently of tetramer formation and septal anchoring in Vibrio cholerae

 Elena Espinosa , Jihane Challita , Jean-Michel Desfontaines , Christophe Possoz , Marie-Eve Val , et al.
Nature Communications, 2024, 15 (1), pp.9893. ⟨10.1038/s41467-024-54195-0⟩
Article dans une revue hal-04781720v1

Metagenomes Binning Using Proximity-Ligation Data

 Martial Marbouty , Romain Koszul
Hi-C Data Analysis, 2301, Springer US, pp.163-181, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1390-0_8⟩
Chapitre d'ouvrage pasteur-03369745v1
Image document

Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria

 Quentin Lamy-Besnier , Amaury Bignaud , Julian R Garneau , Marie Titecat , Devon E Conti , et al.
Microbiome, 2023, 11 (1), pp.111. ⟨10.1186/s40168-023-01541-x⟩
Article dans une revue pasteur-04158849v1
Image document

Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer

 Vittore F Scolari , Guillaume Mercy , Romain Koszul , Annick Lesne , Julien Mozziconacci
Physical Review Letters, 2018, 121 (5), pp.057801. ⟨10.1103/PhysRevLett.121.057801⟩
Article dans une revue hal-01992814v1
Image document

Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging.

 Martial Marbouty , Antoine Le gall , Diego I Cattoni , Axel Cournac , Alan Koh , et al.
Molecular Cell, 2015, 59 (4), pp.588-602. ⟨10.1016/j.molcel.2015.07.020⟩
Article dans une revue pasteur-01419993v1
Image document

Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes

 Amaury Bignaud , Charlotte Cockram , Céline Borde , Justine Groseille , Eric Allemand , et al.
Nature Structural and Molecular Biology, 2024, ⟨10.1038/s41594-023-01178-2⟩
Article dans une revue hal-04468362v1
Image document

The silencing factor Sir3 is a molecular bridge that sticks together distant loci

 Myriam Ruault , Vittore F Scolari , Luciana Lazar-Stefanita , Antoine Hocher , Isabelle Loïodice , et al.
2020
Pré-publication, Document de travail hal-03013702v1
Image document

A Proximity Ligation-Based Method for Quantitative Measurement of D-Loop Extension in S. cerevisiae

 Aurele Piazza , Romain Koszul , Wolf-Dietrich Heyer
Mechanisms of DNA Recombination and Genome Rearrangements: Intersection between Homologous Recombination, DNA Replication and DNA Repair, 601, pp.27-44, 2018, Methods in enzymology, 978-0-12-813979-0. ⟨10.1016/bs.mie.2017.11.024⟩
Chapitre d'ouvrage pasteur-02868112v1
Image document

Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

 Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn , et al.
Communications Biology, 2021, 4 (1), pp.1-15. ⟨10.1038/s42003-020-01623-8⟩
Article dans une revue hal-03127732v1
Image document

4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans

 Robert A. Gaultney , Antony T. Vincent , Céline Lorioux , Jean-Yves Coppée , Odile Sismeiro , et al.
Nucleic Acids Research, 2020, pp.gkaa966. ⟨10.1093/nar/gkaa966⟩
Article dans une revue pasteur-03006760v1
Image document

Chromosome-level quality scaffolding of brown algal genomes using InstaGRAAL, a proximity ligation-based scaffolder

 Lyam Baudry , Martial Marbouty , Hervé Marie-Nelly , Alexandre Cormier , Nadège Guiglielmoni , et al.
2021
Pré-publication, Document de travail hal-02947625v1
Image document

Condensin-Mediated Chromosome Folding and Internal Telomeres Drive Dicentric Severing by Cytokinesis

 Thomas Guerin , Claire Béneut , Natalja Barinova , Virginia López , Luciana Lazar-Stefanita , et al.
Molecular Cell, 2019, 75 (1), pp.131-144.e3. ⟨10.1016/j.molcel.2019.05.021⟩
Article dans une revue pasteur-02866762v1
Image document

Filling annotation gaps in yeast genomes using genome-wide contact maps.

 Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Gianni Liti , Gilles Fischer , et al.
Bioinformatics, 2014, 30 (15), pp.2105-13. ⟨10.1093/bioinformatics/btu162⟩
Article dans une revue pasteur-01488132v1

Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome

 Yue Shen , Yun Wang , Tai Chen , Feng Gao , Jianhui Gong , et al.
Science, 2017, 355 (6329), pp.eaaf4791. ⟨10.1126/science.aaf4791⟩
Article dans une revue pasteur-02868099v1
Image document

instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

 Lyam Baudry , Nadège Guiglielmoni , Hervé Marie-Nelly , Alexandre Cormier , Komlan Avia , et al.
Genome Biology, 2020, 21 (1), ⟨10.1186/s13059-020-02041-z⟩
Article dans une revue pasteur-02873422v1
Image document

Multiplex assays for the identification of serological signatures of SARS-CoV-2 infection: an antibody-based diagnostic and machine learning study

 Jason Rosado , Stéphane Pelleau , Charlotte A. Cockram , Sarah Hélène Merkling , Narimane Nekkab , et al.
The Lancet Microbe, 2021, 2 (2), pp.e60-e69. ⟨10.1016/S2666-5247(20)30197-X⟩
Article dans une revue hal-03128905v1
Image document

Kinetics of the Severe Acute Respiratory Syndrome Coronavirus 2 Antibody Response and Serological Estimation of Time Since Infection

 Stéphane Pelleau , Tom Woudenberg , Jason Rosado , Françoise Donnadieu , Laura Garcia , et al.
Journal of Infectious Diseases, 2021, 224 (9), pp.1489-1499. ⟨10.1093/infdis/jiab375⟩
Article dans une revue pasteur-03319587v2
Page :