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Experimental Evolution as a Tool to Investigate Natural Processes and Molecular Functions
Philippe Remigi
,
Catherine Masson-Boivin
,
Eduardo P C Rocha
Article dans une revue
hal-02329724v1
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Latent evolution of biofilm formation depends on life-history and genetic background
Amandine Nucci
,
Eduardo P C Rocha
,
Olaya Rendueles
Article dans une revue
pasteur-04177373v1
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1926–2016: 90 Years of listeriology
Alice Lebreton
,
Fabrizia Stavru
,
Sylvain Brisse
,
Pascale Cossart
Article dans une revue
hal-01400517v2
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A widespread family of phage-inducible chromosomal islands only steals bacteriophage tails to spread in nature
Nasser Alqurainy
,
Laura Miguel-Romero
,
Jorge Moura de Sousa
,
John Chen
,
Eduardo P.C. Rocha
,
et al.
Article dans une revue
pasteur-03952543v2
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Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
Sebastien Breurec
,
Alexis Criscuolo
,
Laure Diancourt
,
Olaya Rendueles
,
Mathias Vandenbogaert
,
et al.
Article dans une revue
hal-02613124v1
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PanACoTA: a modular tool for massive microbial comparative genomics
Amandine Perrin
,
Eduardo P. C. Rocha
Article dans une revue
hal-03357352v1
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BioConvert: a comprehensive format converter for life sciences
Hugo Caro
,
Sulyvan Dollin
,
Anne Biton
,
Bryan Brancotte
,
Dimitri Desvillechabrol
,
et al.
Article dans une revue
pasteur-04279554v2
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Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling
Alonso Felipe-Ruiz
,
Alberto Marina
,
Eduardo P C Rocha
Article dans une revue
pasteur-03952614v1
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Transient Hypermutagenesis Accelerates the Evolution of Legume Endosymbionts following Horizontal Gene Transfer
Philippe Remigi
,
Delphine Capela
,
Camille Clerissi
,
Léna Tasse
,
Rachel Torchet
,
et al.
Article dans une revue
pasteur-01374959v1
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Phages and their satellites encode hotspots of antiviral systems
François Rousset
,
Florence Depardieu
,
Solange Miele
,
Julien Dowding
,
Anne-Laure Laval
,
et al.
Article dans une revue
pasteur-04075930v1
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A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria
Aude Bernheim
,
David Bikard
,
Marie Touchon
,
Eduardo P C Rocha
Philosophical Transactions of the Royal Society B: Biological Sciences, 2019, 374 (1772), pp.20180088. ⟨10.1098/rstb.2018.0088⟩
Article dans une revue
hal-02329742v1
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Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements
Aude Bernheim
,
David Bikard
,
Marie Touchon
,
Eduardo Rocha
Article dans une revue
pasteur-02626502v1
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Selection for the bacterial capsule in the absence of biotic and abiotic aggressions depends on growth conditions
Amandine Buffet
,
Eduardo P. C. Rocha
,
Olaya Rendueles
2020
Pré-publication, Document de travail
pasteur-02991089v1
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Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime
Marta Marchetti
,
Camille Clerissi
,
Yasmine Yousfi
,
Carine Gris
,
Olivier Bouchez
,
et al.
Article dans une revue
hal-01607703v1
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Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
Alexandra Moura
,
Alexis Criscuolo
,
Hannes Pouseele
,
Mylène M. Maury
,
Alexandre Leclercq
,
et al.
Article dans une revue
pasteur-01415883v1
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Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion
Eugen Pfeifer
,
Rémy A. Bonnin
,
Eduardo Rocha
Article dans une revue
pasteur-03818031v1
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Role of Klebsiella pneumoniae Type VI secretion system (T6SS) in long-term gastrointestinal colonization
Thomas Merciecca
,
Stéphanie Bornes
,
Laurence Nakusi
,
Sébastien Theil
,
Olaya Rendueles
,
et al.
Article dans une revue
pasteur-03809977v1
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A Single Amino Acid Substitution Changes the Self-Assembly Status of a Type IV Piliation Secretin
N. N. Nickerson
,
S. S. Abby
,
E. P. C. Rocha
,
M. Chami
,
A. P. Pugsley
Article dans une revue
pasteur-01374952v1
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Unlinked rRNA genes are widespread among Bacteria and Archaea
Tess E Brewer
,
Mads Albertsen
,
Arwyn Edwards
,
Rasmus H Kirkegaard
,
Eduardo P C Rocha
,
et al.
Article dans une revue
hal-02363135v1
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Identification and characterization of thousands of bacteriophage satellites across bacteria
Jorge Moura de Sousa
,
Alfred Fillol-Salom
,
José Penadés
,
Eduardo P.C. Rocha
Article dans une revue
hal-03838678v2
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Bacteria have numerous distinctive groups of phage-plasmids with conserved phage and variable plasmid gene repertoires
Eugen Pfeifer
,
Jorge A Moura de Sousa
,
Marie Touchon
,
Eduardo P. C. Rocha
Article dans une revue
hal-03357369v1
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MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes
Bertrand Néron
,
Rémi Denise
,
Charles Coluzzi
,
Marie Touchon
,
Eduardo P.C. Rocha
,
et al.
Article dans une revue
pasteur-04060331v2
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Bacteriophages benefit from generalized transduction
Alfred Fillol-Salom
,
Ahlam Alsaadi
,
Jorge A Moura de Sousa
,
Li Zhong
,
Kevin R Foster
,
et al.
Article dans une revue
pasteur-04076056v1
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Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits
Amandine Nucci
,
Eduardo Rocha
,
Olaya Rendueles
Article dans une revue
pasteur-03794548v1
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Recruitment of a Lineage-Specific Virulence Regulatory Pathway Promotes Intracellular Infection by a Plant Pathogen Experimentally Evolved into a Legume Symbiont
Delphine Capela
,
Marta Marchetti
,
Camille Clerissi
,
Anthony Perrier
,
Dorian Guetta
,
et al.
Article dans une revue
hal-02620519v1
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Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria
Liam Shaw
,
Eduardo Rocha
,
R Craig Maclean
Article dans une revue
pasteur-04236062v1
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Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease
Alexis Criscuolo
,
Arnaud de La Blanchardière
,
Solène Coeuret
,
Virginie Passet
,
Virginie Saguet-Rysanek
,
et al.
Article dans une revue
pasteur-02869569v1
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IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella
Bertrand Néron
,
Eloi Littner
,
Matthieu Haudiquet
,
Amandine Perrin
,
Jean Cury
,
et al.
Article dans une revue
hal-03655020v1
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Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae
Matthieu Haudiquet
,
Amandine Buffet
,
Olaya Rendueles
,
Eduardo P. C. Rocha
Article dans une revue
hal-03281367v1
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Differences in Integron Cassette Excision Dynamics Shape a Trade-Off between Evolvability and Genetic Capacitance
Céline Loot
,
Aleksandra Nivina
,
Jean Cury
,
José Antonio Escudero
,
Magaly Ducos-Galand
,
et al.
Article dans une revue
pasteur-01689524v1
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