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Hybrid Electron Microscopy Normal Mode Analysis with Scipion
Mohamad Harastani
,
Carlos Oscar S. Sorzano
,
Slavica Jonic
Journal articles
hal-02388487v1
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DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images
Ilyes Hamitouche
,
Slavica Jonic
Journal articles
hal-03750789v1
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NMMD: Efficient cryo-EM flexible fitting based on simultaneous Normal Mode and Molecular Dynamics atomic displacements
Rémi Vuillemot
,
Osamu Miyashita
,
Florence Tama
,
Isabelle Rouiller
,
Slavica Jonic
et al.
Journal articles
hal-03577246v1
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MDSPACE: Extracting continuous conformational landscapes from cryo-EM single particle datasets using 3D-to-2D flexible fitting based on Molecular Dynamics simulation
Rémi Vuillemot
,
Alex Mirzaei
,
Mohamad Harastani
,
Ilyes Hamitouche
,
Léo Fréchin
et al.
Journal articles
hal-03929029v1
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Combined Bayesian and Normal Mode Flexible Fitting with Hamiltonian Monte Carlo Sampling for Cryo Electron Microscopy
Rémi Vuillemot
,
Slavica Jonic
Conference papers
hal-03266628v1
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Deep learning of elastic 3D shapes for cryo electron microscopy analysis of continuous conformational changes of biomolecules
Ilyes Hamitouche
,
Slavica Jonic
Conference papers
hal-03266630v1
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Code and test data of ContinuousFlex plugin for analyzing continuous conformational variability of biomolecular complexes in cryo-EM and cryo-ET data
Slavica Jonic
,
Mohamad Harastani
Software
hal-03501129v1
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ContinuousFlex: Software package for analyzing continuous conformational variability of macromolecules in cryo electron microscopy and tomography data
Mohamad Harastani
,
Rémi Vuillemot
,
Ilyes Hamitouche
,
Nima Barati Moghadam
,
Slavica Jonic
et al.
Journal articles
hal-03821777v1
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