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ANR project: Code decision (reference) : ANR-17-CE40-0024
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Optimizing bacterial resource allocation: metabolite production in continuous bioreactors

Agustín Gabriel Yabo , Jean-Luc Gouzé
IFAC 2020 - 1st Virtual World Congress by the International Federation of Automatic Control, Jul 2020, Berlin / Virtual, Germany
Conference papers hal-02980429v1
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Optimal bacterial resource allocation

Agustin Gabriel Yabo , Jean-Baptiste Caillau , Jean-Luc Gouzé
DCO 2021 - International Conference on Dynamic Control and Optimization, Feb 2021, Aveiro, Portugal
Conference papers hal-03528000v1
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Optimal allocation of bacterial resources in fed-batch reactors

Agustin Gabriel Yabo , Jean-Baptiste Caillau , Jean-Luc Gouzé
2022 European Control Conference (ECC), Jul 2022, London, United Kingdom. pp.1466-1471, ⟨10.23919/ECC55457.2022.9838346⟩
Conference papers hal-03421358v2
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Optimal feedback control strategies in a generic class of bacterial growth models with multiple substrates

Agustín Gabriel Yabo
2022
Preprints, Working Papers, ... hal-03913957v1
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Turnpike features in optimal selection of species represented by quota models

Walid Djema , Laëtitia Giraldi , Sofya Maslovskaya , Olivier Bernard
Journal articles hal-03217983v2
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Optimal bacterial resource allocation strategies in batch processing

Agustín Gabriel Yabo , Jean-Baptiste Caillau , Jean-Luc Gouzé
2022
Preprints, Working Papers, ... hal-03710681v1

Multiomics Study of Bacterial Growth Arrest in a Synthetic Biology Application

Delphine Ropers , Yohann Couté , Laëtitia Faure , Sabrina Ferré , Delphine Labourdette et al.
ACS Synthetic Biology, 2021, 10 (11), pp.2910-2926. ⟨10.1021/acssynbio.1c00115⟩
Journal articles hal-03516727v1

Multiomics Study of Bacterial Growth Arrest in a Synthetic Biology Application

Delphine Ropers , Yohann Couté , Laëtitia Faure , Sabrina Ferré , Delphine Labourdette et al.
ACS Synthetic Biology, 2021, 10 (11), pp.2910-2926. ⟨10.1021/acssynbio.1c00115⟩
Journal articles hal-03951287v1
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Singular regimes for the maximization of metabolite production

Agustín Gabriel Yabo , Jean-Baptiste Caillau , Jean-Luc Gouzé
CDC 2019 - 58th IEEE Conference on Decision and Control, Dec 2019, Nice, France. pp.31-36
Conference papers hal-02418444v1
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Control for synchronization of bistable piecewise affine genetic regulatory networks

Nicolas Augier , Madalena Chaves , Jean-Luc Gouzé
CHAOS 2021 - 6th IFAC Hybrid Conference on Analysis and Control of Chaotic Systems, Sep 2021, Catania, Italy. ⟨10.1016/j.ifacol.2021.11.044⟩
Conference papers hal-03317956v1
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Time-optimal control of piecewise affine bistable gene-regulatory networks

Nicolas Augier , Agustín Gabriel Yabo
International Journal of Robust and Nonlinear Control, 2022, 54 (5), pp.205-210. ⟨10.1002/rnc.6012⟩
Journal articles hal-03289633v2
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Qualitative control of undesired oscillations in a genetic negative feedback loop with uncertain measurements

Lucie Chambon , Ismail Belgacem , Jean-Luc Gouzé
Automatica, 2020, 112, pp.108642. ⟨10.1016/j.automatica.2019.108642⟩
Journal articles hal-02418421v1
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Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs

Marco Mauri , Jean-Luc Gouzé , Hidde de Jong , Eugenio Cinquemani
PLoS Computational Biology, 2020, 16 (4), pp.e1007795. ⟨10.1371/journal.pcbi.1007795⟩
Journal articles hal-02640446v1
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Time-optimal control of piecewise affine bistable gene-regulatory networks: preliminary results

Nicolas Augier , Agustín Gabriel Yabo
ADHS 2021 - 7th IFAC Conference on Analysis and Design of Hybrid Systems, IFAC, Jul 2021, Brussels, Belgium. ⟨10.1016/j.ifacol.2021.08.499⟩
Conference papers hal-03099681v4

Qualitative modeling, analysis, and control of synthetic regulatory circuits

Madalena Chaves , Hidde de Jong
Filippo Menolascina. Synthetic Gene Circuits: Methods and Protocols, 2229, Humana Press, pp.1-40, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1032-9_1⟩
Book sections hal-03094873v1
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Dynamical analysis and optimization of a generalized resource allocation model of microbial growth

Agustín Gabriel Yabo , Jean-Baptiste Caillau , Jean-Luc Gouzé , Hidde de Jong , Francis Mairet et al.
SIAM Journal on Applied Dynamical Systems, 2022, 21 (1), pp.137-165. ⟨10.1137/21M141097X⟩
Journal articles hal-03251044v2
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Predicting microbial cell composition and diauxic growth as optimal control strategies

Agustín Gabriel Yabo
2022
Preprints, Working Papers, ... hal-03915491v1
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Optimal bacterial resource allocation: metabolite production in continuous bioreactors

Agustín Gabriel Yabo , Jean-Baptiste Caillau , Jean-Luc Gouzé
Mathematical Biosciences and Engineering, 2020, 17 (6), pp.7074-7100. ⟨10.3934/mbe.2020364⟩
Journal articles hal-02974185v1
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Turnpike property in optimal microbial metabolite production

Jean-Baptiste Caillau , Walid Djema , Jean-Luc Gouzé , Sofya Maslovskaya , Jean-Baptiste Pomet et al.
Journal of Optimization Theory and Applications, 2022, ⟨10.1007/s10957-022-02023-0⟩
Journal articles hal-03328686v2
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Hierarchical MPC applied to bacterial resource allocation and metabolite synthesis

Agustin Gabriel Yabo , Jean-Baptiste Caillau , Jean-Luc Gouzé
CDC 2021 - 60th IEEE Conference on Decision and Control, Dec 2021, Austin, United States. pp.667-672, ⟨10.1109/CDC45484.2021.9683025⟩
Conference papers hal-03189960v2

Optimal proteome allocation and the temperature dependence of microbial growth laws

Francis Mairet , Jean-Luc Gouzé , Hidde de Jong
npj Systems Biology and Applications, In press, 7 (14), ⟨10.1038/s41540-021-00172-y⟩
Journal articles hal-03094908v1