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ANR project: Code decision (reference) : ANR-16-CE02-0015
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Accounting for intraspecific variation to quantify niche dynamics along the invasion routes of Drosophila suzukii

Antoine Fraimout , Anne-Christine Monnet
Biological Invasions, 2018, 20 (10), pp.2963-2979. ⟨10.1007/s10530-018-1750-z⟩
Journal articles hal-03027778v1
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Biological Invasion: The Influence of the Hidden Side of the (Epi)Genome

Pierre Marin , Julien Genitoni , Dominique D. Barloy , Stéphane Maury , Patricia Gibert , et al.
Functional Ecology, 2020, 34 (2), pp.385-400. ⟨10.1111/1365-2435.13317⟩
Journal articles hal-02063295v1
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Microbiota acquisition and transmission in Drosophila flies

Robin Guilhot , Anne Xuéreb , Auxane Lagmairi , Laure Olazcuaga , Simon Fellous
iScience, 2023, 26 (9), pp.107656. ⟨10.1016/j.isci.2023.107656⟩
Journal articles hal-04202804v1

ABC random forests for Bayesian parameter inference

Louis Raynal , Jean-Michel Marin , Pierre Pudlo , Mathieu Ribatet , Christian Robert , et al.
Bioinformatics, 2019, 35 (10), pp.1720-1728. ⟨10.1093/bioinformatics/bty867⟩
Journal articles hal-01337189v2
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The worldwide invasion of Drosophila suzukii is accompanied by a large increase of transposable element load and a small number of putatively adaptive insertions

Vincent Mérel , Patricia Gibert , Inessa Buch , Valentina Rodriguez Rada , Arnaud Estoup , et al.
Molecular Biology and Evolution, 2021, 38 (10), pp.4252-4267. ⟨10.1093/molbev/msab155⟩
Journal articles hal-03015267v2
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Environmental specificity in Drosophila-bacteria symbiosis affects host developmental plasticity

Robin Guilhot , Antoine Rombaut , Anne Xuereb , Kate Howell , · Simon Fellous
Evolutionary Ecology, 2020, 34, pp.693-712. ⟨10.1007/s10682-020-10068-8⟩
Journal articles hal-02933656v1
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Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing

Mathilde Paris , Roxane Boyer , Rita Jaenichen , Jochen Wolf , Marianthi Karageorgi , et al.
Scientific Reports, 2020, 10 (1), pp.11227. ⟨10.1038/s41598-020-67373-z⟩
Journal articles hal-02908174v1
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Limited thermal plasticity and geographical divergence in the ovipositor of Drosophila suzukii

Ceferino Varón-González , Antoine Fraimout , Arnaud Delapre , Vincent Debat , Raphael Cornette
Royal Society Open Science, 2020, 7 (1), pp.191577. ⟨10.1098/rsos.191577⟩
Journal articles hal-02613187v1
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ƒ‐statistics estimation and admixture graph construction with Pool‐Seq or allele count data using the R package poolfstat

Mathieu Gautier , Renaud Vitalis , Laurence Flori , Arnaud Estoup
Molecular Ecology Resources, 2022, 22 (4), pp.1394-1416. ⟨10.1111/1755-0998.13557⟩
Journal articles hal-03481066v1

Oviposition Preference and Larval Performance of Drosphila suzukii (Diptera: Drosophilidae), Spotted-Wing Drosophila: Effects of Fruit Identity and Composition

Laure Olazcuaga , Nicolas O. Rode , Julien Foucaud , Benoit Facon , Virginie Ravigné , et al.
Environmental Entomology, 2019, 48 (4), pp.867-881. ⟨10.1093/ee/nvz062⟩
Journal articles hal-02629265v1

Phenotypic plasticity of Drosophila suzukii wing to developmental temperature: implications for flight

Antoine Fraimout , Pauline Jacquemart , Bruno Villarroel , David Aponte , Thierry Décamps , et al.
Journal of Experimental Biology, 2018, 221 (13), pp.jeb166868. ⟨10.1242/jeb.166868⟩
Journal articles hal-02105769v1
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A valuable work lying at the crossroad of neuro-ethology, evolution and ecology in the fruit pest Drosophila suzukii

Arnaud A Estoup , Ruth A Hufbauer
Peer Community in Evolutionary Biology, 2017, ⟨10.24072/pci.evolbiol.100017⟩
Journal articles hal-01501559v1
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A whole-genome scan for association with invasion success in the fruit fly Drosophila suzukii using contrasts of allele frequencies corrected for population structure

Laure Olazcuaga , Anne Loiseau , Hugues Parrinello , Mathilde Paris , Antoine Fraimout , et al.
Molecular Biology and Evolution, 2020, 37 (8), pp.2369-2385. ⟨10.1093/molbev/msaa098⟩
Journal articles hal-02563272v1
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Microbiota-mediated competition between Drosophila species

Antoine Rombaut , Romain Gallet , Kenza Qitout , Mukherjy Samy , Robin Guilhot , et al.
Microbiome, 2023, 11, pp.201. ⟨10.1186/s40168-023-01617-8⟩
Journal articles hal-04209915v1
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Adaptation and correlated fitness responses over two time scales in Drosophila suzukii populations evolving in different environments

Laure Olazcuaga , Julien Foucaud , Mathieu Gautier , Candice Deschamps , Anne Loiseau , et al.
Journal of Evolutionary Biology, In press, ⟨10.1111/jeb.13878⟩
Journal articles hal-03261534v2

The invasive pest Drosophila suzukii uses trans-generational medication to resist parasitoid attack

M. Poyet , P. Eslin , O. Chabrerie , S. Prud’homme , E. Desouhant , et al.
Scientific Reports, 2017, 7 (1), ⟨10.1038/srep43696⟩
Journal articles hal-01921758v1
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Influence of bacteria on the maintenance of a yeast during Drosophila melanogaster metamorphosis

Robin Guilhot , Antoine Rombaut , Anne Xuéreb , Kate Howell , Simon Fellous
Animal Microbiome, 2021, 3, ⟨10.1186/s42523-021-00133-0⟩
Journal articles hal-03483552v1
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Yeast facilitates the multiplication of Drosophila bacterial symbionts but has no effect on the form or parameters of Taylor’s law

Robin Guilhot , Simon Fellous , Joel E. Cohen
PLoS ONE, 2020, 15 (11), pp.e0242692. ⟨10.1371/journal.pone.0242692⟩
Journal articles hal-03106430v1
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Phenotypic plasticity in the invasive pest Drosophila suzukii: activity rhythms and gene expression in response to temperature

Christophe Plantamp , Hélène Henri , Thibault Andrieux , Corinne Régis , Gladys Mialdea , et al.
Journal of Experimental Biology, 2019, 222, pp.jeb199398. ⟨10.1242/jeb.199398⟩
Journal articles hal-03015319v1
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A young age of subspecific divergence in the desert locust Schistocerca gregaria , inferred by ABC Random Forest

Marie-Pierre Chapuis , Louis Raynal , Christophe Plantamp , Christine N. Meynard , Laurence Blondin , et al.
Molecular Ecology, 2020, Peer Community in Evolutionary Biology, 29 (23), pp.4542-4558. ⟨10.1101/671867⟩
Journal articles hal-02953927v1
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The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions

Vincent Mérel , Patricia Gibert , Inessa Buch , Valentina Rodriguez Rada , Arnaud Estoup , et al.
Molecular Biology and Evolution, 2021, 38 (10), pp.4252-4267. ⟨10.1093/molbev/msab155⟩
Journal articles hal-03417234v1
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Phenotypic and Transcriptomic Responses to Stress Differ According to Population Geography in an Invasive Species

Pierre Marin , Angelo Jaquet , Justine Picarle , Marie Fablet , Vincent Merel , et al.
Genome Biology and Evolution, 2021, 13 (9), pp.evab208. ⟨10.1093/gbe/evab208⟩
Journal articles hal-03417240v1
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Measuring Genetic Differentiation from Pool-seq Data

Valentin Hivert , Raphael Leblois , Eric Petit , Mathieu Gautier , Renaud Vitalis
Genetics, 2018, 210 (1), pp.315-330. ⟨10.1534/genetics.118.300900⟩
Journal articles hal-01936905v1
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Drosophila suzukii wing spot size is robust to developmental temperature

Ceferino Varón-González , Antoine Fraimout , Vincent Debat
Ecology and Evolution, 2020, 10 (7), pp.3178-3188. ⟨10.1002/ece3.5902⟩
Journal articles hal-02557005v1
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Extending Approximate Bayesian Computation with Supervised Machine Learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest

François‐david Collin , Ghislain Durif , Louis Raynal , Eric Lombaert , Mathieu Gautier , et al.
Molecular Ecology Resources, 2021, 21 (8), pp.2598-2613. ⟨10.1111/1755-0998.13413⟩
Journal articles hal-03229207v1