mRNA Degradation and Decay
Résumé
Why is it important to understand mRNA degradation in a cell? First,
RNA degradation has a clearing function and removes RNAs arising from tran-
scription, splicing, export, or translation “accidents” to ensure robust gene
expression (see Chap. 8). Second, while regulation of gene expression has a very
important transcription component, mRNAs must be turned over rapidly for fast
changes in transcriptome composition. Coordinated destabilization of an entire
class of mRNAs can promote major physiological changes in a cell. Third, specific
mechanisms of mRNA decay can serve to regulate gene expression through
feedback control. Research on these topics has been frequently done first with
yeasts and led to a better understanding of gene expression in eukaryotes. We start
with an overview of the methods for measuring mRNA decay on a large scale with
an emphasis on how technical issues affect the current picture of global mRNA
decay in yeast. Next, we describe the importance of nuclear degradation in shaping
the stable transcriptome. Once in the cytoplasm, mRNAs are exposed to translation
and we provide an overview of the complexes and individual enzymes that ensure
progressive deadenylation, mRNA decapping, and 5 ́ to 3 ́ or 3 ́ to 5 ́ exonucle-
olytic RNA degradation. Finally, how organelle transcripts are degraded in
mitochondria is briefly exposed.
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